7 Causes QuickBooks Payroll Fails to Generate Correct FUTA Report

When QuickBooks Payroll shows incorrect FUTA (Federal Unemployment Tax Act) data or fails to generate Form 940, it’s often tied to misconfigured payroll items, outdated tax tables, or employee classification errors. FUTA miscalculations can disrupt federal compliance and result in IRS penalties.

What Causes the FUTA Report Error in QuickBooks Payroll?

FUTA errors usually arise from setup problems in company tax settings, employee exemptions, or outdated forms. Below are the most common causes of reporting breakdowns in QuickBooks:

1. Payroll Tax Table Is Not Updated

QuickBooks uses payroll tax tables to determine correct FUTA calculations. If these tables are outdated, QuickBooks may apply incorrect FUTA rates or miss current credits, resulting in misreporting. Without the latest data, FUTA liabilities may be overstated or understated, causing errors in Form 940. This can trigger IRS penalties or a rejection of your submission. To prevent this, make sure your subscription is active and that all updates are installed before each payroll run. Keeping the tax table current is essential for accurate year-end unemployment tax filings.

Why Does It Happen?

  • Payroll subscription not active or expired
  • Updates skipped after recent payroll run
  • Internet settings prevent automatic downloads
  • User lacks admin access for updates
  • Corruption in downloaded update files

2. Wrong Company Setup for FUTA

Accurate FUTA reporting depends on correct company setup, including EIN, business type, and unemployment tax status. If any of these elements are missing or set incorrectly, QuickBooks might omit your business from the FUTA report or misclassify your liability. This often leads to Form 940 not generating at all or showing partial/incomplete data. Verifying your company’s legal structure, FUTA eligibility, and employer identification details is critical to ensuring QuickBooks files federal unemployment taxes accurately and without rejections.

Why Does It Happen?

  • FUTA not enabled in Payroll Setup Wizard
  • Company uses outdated setup file
  • Employer exempt from FUTA but not flagged
  • Missing or incorrect liability rate
  • Business misclassified under wrong entity type

3. FUTA Payroll Items Are Not Mapped Properly

Each payroll item in QuickBooks must be marked as FUTA-eligible if applicable. If this designation is missing—such as when setting up bonuses, commissions, or custom earnings—QuickBooks will exclude those wages from Form 940. This causes underreporting and could lead to IRS inquiries or fines. Mapping payroll items to FUTA correctly ensures that all relevant wages are included. Even if the employee is eligible, misconfigured items may result in gaps on the final report.

Why Does It Happen?

  • FUTA checkbox not selected in payroll item setup
  • Custom pay items created without FUTA flag
  • Incorrect earning types used for commissions
  • Payroll items copied from old templates
  • Employee wages not marked for FUTA coverage

4. Employees Are Exempted Incorrectly

QuickBooks will not calculate FUTA taxes for employees marked as exempt. If employees are mistakenly set to FUTA-exempt, their wages won’t appear on Form 940—even though they should. This happens often during onboarding or data import when users misclassify job roles or apply incorrect exemptions. It may lead to missing FUTA contributions and potential IRS follow-up. Always review employee tax setups to confirm that exemptions are applied only where legally appropriate.

Why Does It Happen?

  • Exempt box checked during employee setup
  • Manual override altered tax status
  • Imported employee data ignored FUTA settings
  • User changed employee type without review
  • FUTA exemption carried over from old profile

5. Damaged Form Templates or Reporting Module

If the Form 940 template is damaged, QuickBooks may fail to generate it—even if all data is entered correctly. You might see blank forms, export errors, or crash messages. This issue often stems from software updates that were interrupted, antivirus programs blocking core files, or installation conflicts. Fixing the damage may require reinstalling payroll components or repairing the form templates. Regularly backing up QuickBooks and updating software can help prevent this issue.

Why Does It Happen?

  • System crash during last update
  • Conflicting QuickBooks installations
  • Payroll form file deleted or renamed
  • Antivirus blocking tax form rendering
  • Partial software update skipped templates

6. FUTA Liability Exceeded Wage Base Limit

FUTA only applies to the first $7,000 of wages per employee each year. If QuickBooks is misconfigured, it might continue applying the FUTA tax even after this cap is reached. This leads to overstated liability and unnecessary payments. QuickBooks needs accurate year-to-date wage data and proper employee setup to recognize when the limit is hit. Monitoring this threshold ensures compliance and prevents overreporting on Form 940.

Why Does It Happen?

  • FUTA wage base not capped in settings
  • Year-to-date wages not imported correctly
  • Mid-year hire wages miscalculated
  • Manual paycheck override exceeded limit
  • Employee transferred without carryover data

7. State Unemployment (SUI) Credit Not Applied Correctly

Employers typically receive a 5.4% credit on the 6% FUTA rate when SUI payments are made on time. If this credit isn’t applied in QuickBooks—due to missing state information or tax rate errors—the system will overstate your federal liability. It’s critical to set the correct state, assign the SUI rate, and confirm credit eligibility in your payroll tax settings. Missed SUI credits can significantly inflate your FUTA obligations on Form 940.

Why Does It Happen?

  • SUI rate not entered in company tax settings
  • State code missing in employee profile
  • Credit reduction box unchecked in tax settings
  • SUI payments not recorded in QuickBooks
  • State not recognized as credit-eligible

Bottom Line

FUTA tax errors often go unnoticed until year-end filing time—when accuracy matters most. Review your QuickBooks Payroll setup regularly, including employee classifications, wage caps, and tax item mappings. Staying ahead of these issues ensures that your Form 940 is accurate, compliant, and filed on time.

FAQs

Q1: Why isn’t Form 940 generated in QuickBooks?

The company’s EIN, business type, or tax setup may be incomplete. Without this information, QuickBooks blocks form creation.

Q2: How do I verify FUTA settings in payroll items?

Edit each payroll item and confirm the “Subject to FUTA” checkbox is enabled under tax tracking.

Q3: Should all employees be marked for FUTA?

Only exempt employees—like some agricultural or nonprofit workers—should be excluded. Others must remain FUTA-eligible.

Q4: Can I override FUTA tax manually in QuickBooks?

Yes, but it’s risky. Manual overrides can conflict with system logic and affect Form 940 reporting.

Q5: Why is my FUTA liability too high?

Check if employees exceeded the $7,000 wage base without capping or if the SUI credit wasn’t applied properly.

Q6: What reports help audit FUTA calculations?

Use the “Payroll Tax Liability” and “Payroll Item Detail” reports. These reveal which wages were taxed under FUTA and flag overages.